PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01030.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 352aa    MW: 38930.2 Da    PI: 6.0519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01030.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.85.4e-15162208354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h+e+ErrRR+riN+ f++Lr++lP+      +K +Ka+ L ++++++k+L
  Rsa1.0_01030.1_g00006.1 162 KSHSEAERRRRERINNHFAKLRSILPST-----TKTDKASLLAEVIQHVKEL 208
                              79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.876159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-12162208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-15163219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14163219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-5172211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MCAKKQEEVE SSEAMNNIQN YQNDLFFHQL ISHHHHQDPS QAETSGAPDN NAGSGYTIFS  60
QDSVSPIWPT SAQPPFDQFP PPSFYGSFFN RSRAHHQGLQ FGYEGFGGAT SATHHHHEQL  120
RILSEALGPV VQVGSGPFGL QAELGKMTAQ EIMDAKALAA SKSHSEAERR RRERINNHFA  180
KLRSILPSTT KTDKASLLAE VIQHVKELKR ETSVISETNL VPTESNELTV AFTEEEDSGD  240
GRFVIKASVC CEDRSDLLPD MIKTLKAMRL KTIKAEITTV GERVRNVLFI AGEESSGEDG  300
TEEYSIGTIE AALKAVIEKS NVEESSSSAN AKRQRMSSHN TITIVEQQQH HM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721610.0AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
GenBankAY1229830.0AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468456.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y10.0BH030_ARATH; Transcription factor bHLH30
TrEMBLV4JST70.0V4JST7_EUTSA; Uncharacterized protein
STRINGBra004015.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-180bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]