PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01019.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 308aa    MW: 34899.2 Da    PI: 5.0554
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01019.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52e-07145189655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              n  E++ R++iN+++  L+ llPk+      K +  ++L +A++Y+ +Lq
  Rsa1.0_01019.1_g00001.1 145 NSPEKKQRNDINKKLRALQNLLPKS-----DKEDNESTLDEAINYVTNLQ 189
                              6679********************8.....699999**********9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.40E-8136193No hitNo description
Gene3DG3DSA:4.10.280.102.0E-10137200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.17139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-12144211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-6145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-5145189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MTSPSSSTFR PKLTDQEYME LVFENGQFLA KSQRSNAFSL QNQRTKSIVD LYEEEYNEDF  60
KQTLKDCSSK NMVVDYQEVE FIPPDEQSVV VAKRSVEFSF DSTDFTADSE WSTYLSSDES  120
DPRPRVPART RKALVKRRRS NELYNSPEKK QRNDINKKLR ALQNLLPKSD KEDNESTLDE  180
AINYVTNLQL QVQMMTMSNG FVAPAMMLPF GPHYSQMGLP TCMQMGVPQF LPPPVLGSGY  240
SADMQMFLNH PGLMPMQNSA FFNPAENYFP QSVPPSCVAF PNQIQNSTTL SNLDDARTHG  300
GSLSGKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01019.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442860.10.0PREDICTED: transcription factor PIF6-like
SwissprotQ8L5W71e-124PIF6_ARATH; Transcription factor PIF6
TrEMBLA0A078JI671e-162A0A078JI67_BRANA; BnaC06g42980D protein
TrEMBLA0A0D3CVA61e-162A0A0D3CVA6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FW211e-162A0A3P6FW21_BRAOL; Uncharacterized protein
STRINGBo6g079220.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134231425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62090.21e-126phytochrome interacting factor 3-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Adams E,Diaz C,Hong JP,Shin R
    14-3-3 proteins participate in light signaling through association with PHYTOCHROME INTERACTING FACTORs.
    Int J Mol Sci, 2014. 15(12): p. 22801-14
    [PMID:25501334]
  5. Galv√£o VC,Collani S,Horrer D,Schmid M
    Gibberellic acid signaling is required for ambient temperature-mediated induction of flowering in Arabidopsis thaliana.
    Plant J., 2015. 84(5): p. 949-62
    [PMID:26466761]
  6. Gomez EJ,Gerhardt K,Judd J,Tabor JJ,Suh J
    Light-Activated Nuclear Translocation of Adeno-Associated Virus Nanoparticles Using Phytochrome B for Enhanced, Tunable, and Spatially Programmable Gene Delivery.
    ACS Nano, 2016. 10(1): p. 225-37
    [PMID:26618393]
  7. Ochoa-Fernandez R, et al.
    Optogenetics in Plants: Red/Far-Red Light Control of Gene Expression.
    Methods Mol. Biol., 2016. 1408: p. 125-39
    [PMID:26965120]
  8. Gangl R,Tenhaken R
    Raffinose Family Oligosaccharides Act As Galactose Stores in Seeds and Are Required for Rapid Germination of Arabidopsis in the Dark.
    Front Plant Sci, 2016. 7: p. 1115
    [PMID:27507985]
  9. Paik I,Kathare PK,Kim JI,Huq E
    Expanding Roles of PIFs in Signal Integration from Multiple Processes.
    Mol Plant, 2017. 10(8): p. 1035-1046
    [PMID:28711729]