PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01001.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 388aa    MW: 42466.1 Da    PI: 7.6605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01001.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63e-15203248555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn+ Er+RR++iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Rsa1.0_01001.1_g00008.1 203 HNQSERKRREKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 248
                              9************************8.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-18196259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.771198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-17203258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.51E-17203252No hitNo description
PfamPF000107.9E-13203248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSQRVPYCHI DETPAATVRS TKAADIPMLN YEVAELTWEN GQLGLHSLGP TPVPAPSKYF  60
TGAGGTLESI VDQATRFPNP KPTDELVPWF HPRSSTAGLD ALVPEQQSHP PTHVDSCSNG  120
HPMAGVKRAR VASGWSTGGS QNLTFETYGF TSTSLDDNSS SGGKPCTKTS NIYGHDSMEE  180
EEEKQAGGKS SVSTKRSSAA VIHNQSERKR REKINQRMKT LQKLVPNSSK TDKASMLDEV  240
IEYLKQLQAQ VSMMCRMNMP SMMLPMAMQQ QQQQLQLSLM SSSMGLGLGM GMPGLGLLDL  300
NSMNRAAATA PNIHANMMPN PFVPMTSPSW EASSSTDTRF QSPLIHDPMP AFLSRSSQQT  360
TMEAYSRMAA LYYQQMQQQM IPTPSNPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211ERKRRE
2207212RKRREK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01001.1_g00008.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172290.0AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBankBT0259710.0BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455997.10.0PREDICTED: transcription factor UNE10-like
RefseqXP_018456003.10.0PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ381e-164UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A3P5XT610.0A0A3P5XT61_BRACM; Uncharacterized protein
STRINGBra000560.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-161bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]