PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00989.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 244aa    MW: 27678 Da    PI: 4.31
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00989.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.5e-145699755
                             HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YI+ Lq
  Rsa1.0_00989.1_g00004.1 56 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 99
                             57*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1774998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1752115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.73E-135299No hitNo description
SMARTSM003533.2E-1455104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1755114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-115699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MENIDQEFNN YWETNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN  60
RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY EESKLEAEIR ELESTPKTSP  120
SFSKDFDRDL LVPVTSKKMK QLDSGSSRSL IEVLEVTYMG ERTVVVNVTC NKRPDTMVKL  180
CEVFESLNLK ILTSNLNSFS GMIFNTVFIE ADEEEQEVVR LKIETGIGAY NETQSPTLSI  240
DSLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1454108963Transcription factor MYC2
5gnj_B4e-1454108963Transcription factor MYC2
5gnj_E4e-1454108963Transcription factor MYC2
5gnj_F4e-1454108963Transcription factor MYC2
5gnj_G4e-1454108963Transcription factor MYC2
5gnj_I4e-1454108963Transcription factor MYC2
5gnj_M4e-1454108963Transcription factor MYC2
5gnj_N4e-1454108963Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00989.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866660.0AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464657.11e-168PREDICTED: transcription factor bHLH35 isoform X2
SwissprotQ2HIV91e-161BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A078IEW91e-165A0A078IEW9_BRANA; BnaA02g08320D protein
TrEMBLA0A3P6A2S21e-165A0A3P6A2S2_BRACM; Uncharacterized protein
STRINGBra020462.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-148bHLH family protein