PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00949.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 580aa    MW: 64234.1 Da    PI: 6.8993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00949.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12422467454
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  Rsa1.0_00949.1_g00010.1 422 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 467
                              799***********************66......***************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.8E-5049239IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.136418467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-18421486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.19E-14421472No hitNo description
Gene3DG3DSA:4.10.280.101.5E-17422481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10422467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16424473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MSSNNNRVWN EDDKAIVASL LGKKALDYLL SNSVPNANLL MTVGSDDNLQ NKLSDLVETP  60
NSSNFSWNYA IFWQVSRSKS GDLVLCWGDG SCREPKDGEK SEMMRMLSMG REEETHQTLR  120
KRVLQKLHAL FGGLDDEEDN CALVLDRVTD TEMFLLASMY FSFPRGQGGP GKCFHSSHPV  180
WLSDLVNSGS DYCVRSFLAK SAGIQTVVLV PTDIGVVELG STSCLPHSDD SISSIRSSFS  240
SPPPPPPPVR VVLPVVVADD NSSSKIFGKD LHTSPAFLHH HHQQQQHNRQ FREKLTVRKM  300
DDRVPKRLDG NRFMFSNPST TPTWIPPPRT NNNSVTAEAP SREDFKFLPL QQSSSSSHRL  360
LPPAQMQIDF SGASSRASET HSDGGGGADW ADLVGGADES GGDNRPRKRG RRPANGRVEA  420
LNHVEAERQR REKLNQRFYA LRSVVPNISK MDKASLLGDA VSYINELYAK LKVMEAERER  480
LGYSSNPHLC LEQPVINVQT AGEDVAVTVS CPLDSHPASR IFHAFEEAKV EVINSKLEVP  540
QDLVLHTFVI KSEEVTKEKL ISALSREQSS SVQSRTSSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-23452405193Transcription factor MYC3
4rqw_B1e-23452405193Transcription factor MYC3
4rs9_A1e-23452405193Transcription factor MYC3
4yz6_A1e-23452405193Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119682.10.0PREDICTED: transcription factor bHLH13
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLM4EWT80.0M4EWT8_BRARP; Uncharacterized protein
STRINGBra033273.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein