PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00941.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 225aa    MW: 24860.7 Da    PI: 4.5589
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00941.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.3e-181868155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+++++g
  Rsa1.0_00941.1_g00006.1 18 PVYRGVRMRR-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAALSIKG 68
                             68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-121868IPR001471AP2/ERF domain
SMARTSM003801.5E-341982IPR001471AP2/ERF domain
PROSITE profilePS5103222.9581976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-311977IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-211976IPR016177DNA-binding domain
CDDcd000183.77E-322078No hitNo description
PRINTSPR003676.4E-102031IPR001471AP2/ERF domain
PRINTSPR003676.4E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVDSSLGSDK KKKGNKQPVY RGVRMRRWGK WVSEIREPRK KSRIWLGTFP TAEMAMRAHD  60
VAALSIKGTS AILNFPELSD LLPRPASLSP RDVRAAATKA ALMEFGATAF CQESETNGIV  120
ASESEGNETA ASSIRSDSET SETASFSATS IDEESTVSDN LDKIVELPSL GTSLDESNEF  180
VFFDSLEDLV YIPPWLHSGM EDGFTYNNDS PFKVCEESFS WNHFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-181481977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00941.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448048.11e-165PREDICTED: ethylene-responsive transcription factor ERF043-like
SwissprotQ9M0805e-95ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A0D3BLR51e-143A0A0D3BLR5_BRAOL; Uncharacterized protein
STRINGBo3g171090.11e-143(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.11e-91ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]