PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00939.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 444aa    MW: 51080.8 Da    PI: 9.0497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00939.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-08159206455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  Rsa1.0_00939.1_g00015.1 159 SHSLAERVRRGKINERLKCLQDIVPGC----YKAMGMATMLDEIINYVQSLQ 206
                              8*************************8....355999*************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-16153223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-8153210No hitNo description
Gene3DG3DSA:4.10.280.105.0E-16155217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.389155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-6159206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-9161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF134562.0E-7295414No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MANLSSDLQT YTVDDPITQL AELNNTLHQF QTMFAPPFSS SLESLLFHHH QHQPLPDHFL  60
GKSPENNFHQ GVFVPSNIHN KNDESSSRVD TKKRKTLMAS MSTSENSVSD QTSSAQVCIN  120
GNVLTKNSSS RRGKRSKNRE EREREVVHVR AKRGQATDSH SLAERVRRGK INERLKCLQD  180
IVPGCYKAMG MATMLDEIIN YVQSLQNQVE FLSMKLTAAS SYYDFNSEAD AVDSMQYNGR  240
RWDPVDIQGK AKADAEEWFL AQVGEEEITK EKRTVEIQRK RRWSPPMEGW LMCNVGFEWN  300
QRSKVLGVAW VVRNHRGVVL LHSRRAFSNI LSLEDARFET ILWAAESMTS LRYNKMVFSG  360
DFKELFLAIK KPHQWPRLAF QVEELSGKLR LMEEHQLKYV TVEENRGATI IAQSVTRQGR  420
VRSYVATGHP EWLFELFVNE SRLL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00939.1_g00015.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454690.11e-169PREDICTED: transcription factor BEE 3
SwissprotQ8GWK71e-124BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A3P6BXV51e-160A0A3P6BXV5_BRACM; Uncharacterized protein
TrEMBLM4DHI31e-160M4DHI3_BRARP; Uncharacterized protein
STRINGBra015960.1-P1e-161(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.23e-98BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]