PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00935.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 241aa    MW: 26958.4 Da    PI: 7.2524
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00935.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.6e-1460106354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r+h ++E+rRRdriNs ++ Lr+++P +      Kl+Ka+ Le+++e +k+L
  Rsa1.0_00935.1_g00003.1  60 RSHRQAEKRRRDRINSHLSALRKIVPDS-----DKLDKAALLERVIEQVKEL 106
                              68*************************8.....7*************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.20557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-1357110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-1360109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-1160106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-1260108No hitNo description
SMARTSM003539.2E-1263112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MENSYESAAA GKWSDSTSPY NMVSWSLLQP DSSDTDLSRF NLGSSDEFVG GNDKAELVSR  60
SHRQAEKRRR DRINSHLSAL RKIVPDSDKL DKAALLERVI EQVKELKQNA KDSPIFDDLP  120
TEADEVIILP ETISNDFKPD TIIFKTSFCC PDQTEAIPEI VGVLTKFQLE TIRAEIICVG  180
GRMRINFILK ETATSTSAKA LKQSLCAALN RITSLSSSST SSVCRIRSKR QRWFLSSNYS  240
Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734524.11e-149PREDICTED: transcription factor bHLH51-like
SwissprotQ9XEF01e-110BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A078EZU51e-147A0A078EZU5_BRANA; BnaA03g18960D protein
TrEMBLM4C7J91e-147M4C7J9_BRARP; Uncharacterized protein
STRINGBra000177.1-P1e-146(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-111bHLH family protein