PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00915.1_g00019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 440aa    MW: 48027.2 Da    PI: 6.4104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00915.1_g00019.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09249296455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Rsa1.0_00915.1_g00019.1 249 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 296
                              8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-17243314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-10243300No hitNo description
PROSITE profilePS5088815.663245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-17245313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6249296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDNELFMNVS EMTSLSSSSP AMLNWASSME THPLEQSVIT RNVPRDCFFW EKSTEQSVIG  60
SAPTSHVSPP SVSNFSGGGG GAIGNLGNIG DIYGAPASII GNSSGSLYAA PTMSSSPPLD  120
AFSGDSRFAE RAARFSCFNG RGTTNGPVAE TASINGELTR VSSTSALKPP TGESSGESSR  180
KRKGKSKENS HSSTVTPSHN LPKEVEEKED SDSKRSKKSK ENGGEDTKSI DPYKDFIHVR  240
ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCNKVTG KALMLDEIIN YVQSLQRQVE  300
FLSMKLSSVN TRLDFNMDAL MSKDIFPSSN NQQVLQLESS SDILLADHHS HTLQLNPNDP  360
SINIMNPMET SESRSFNSQL PTLTHFTDSI SQFSTFSEDD LHSIIHMGFA QNHIRELNHV  420
HSTSFQGPSN QVPSHMKAEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885950.0AF488595.1 Arabidopsis thaliana clone bHLH062 putative bHLH transcription factor mRNA, complete cds.
GenBankAK1753690.0AK175369.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-80-E17.
GenBankAK1754960.0AK175496.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-92-E09.
GenBankBT0264970.0BT026497.1 Arabidopsis thaliana At3g07340 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485436.10.0PREDICTED: transcription factor bHLH62
SwissprotQ9SRT20.0BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A0D3CM280.0A0A0D3CM28_BRAOL; Uncharacterized protein
STRINGBra029640.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-153bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]