PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00889.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 354aa    MW: 39708.5 Da    PI: 4.6807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00889.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12183226654
                              HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                               ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  Rsa1.0_00889.1_g00006.1 183 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 226
                              589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.643177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16180247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-13183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10183226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-5184230No hitNo description
Gene3DG3DSA:4.10.280.105.1E-17184240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MELSTQMNVF EELLVPTKQE TTDNYNISNL SFNGGFDHHQ LFSNGWNIDY LCFNNEEEDE  60
NTLLYSSSFM NLISQPPPLL LHQTPPLPPP SSSSPPLISS TALTFDDPFL EVLQEIIDSS  120
SSSPQVTLPT SQEESFINQS SYPSPLVESD QSKSFSVGYC GGGGETISKK KSKKLEGQPS  180
KNLMAERRRR KRLNDRLSML RSIVPKISKM DRTSILGDAI DYMKELSDKI NKLQEEEQEL  240
GVSNSSHHSR LFGDIKDLNT KENLVRNSPK FEVDRRDQDT RVEICCSPKP GLLLSTVNTL  300
ETLGLEIEQC VISCFSDFSL HASCSEVAQQ RDFINSEDIK QALFRNAGYG GKCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168190KKKSKKLEGQPSKNLMAERRRRK
2185192ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130519.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL10.0BH093_ARATH; Transcription factor bHLH93
TrEMBLM4ESS20.0M4ESS2_BRARP; Uncharacterized protein
STRINGBra031852.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.10.0beta HLH protein 93