PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00889.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 354aa    MW: 39708.5 Da    PI: 4.6807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00889.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12183226654
                              HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                               ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  Rsa1.0_00889.1_g00006.1 183 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 226
                              589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.643177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16180247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-13183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10183226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-5184230No hitNo description
Gene3DG3DSA:4.10.280.105.1E-17184240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MELSTQMNVF EELLVPTKQE TTDNYNISNL SFNGGFDHHQ LFSNGWNIDY LCFNNEEEDE  60
NTLLYSSSFM NLISQPPPLL LHQTPPLPPP SSSSPPLISS TALTFDDPFL EVLQEIIDSS  120
SSSPQVTLPT SQEESFINQS SYPSPLVESD QSKSFSVGYC GGGGETISKK KSKKLEGQPS  180
KNLMAERRRR KRLNDRLSML RSIVPKISKM DRTSILGDAI DYMKELSDKI NKLQEEEQEL  240
GVSNSSHHSR LFGDIKDLNT KENLVRNSPK FEVDRRDQDT RVEICCSPKP GLLLSTVNTL  300
ETLGLEIEQC VISCFSDFSL HASCSEVAQQ RDFINSEDIK QALFRNAGYG GKCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168190KKKSKKLEGQPSKNLMAERRRRK
2185192ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00889.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441728.10.0PREDICTED: transcription factor bHLH93-like isoform X1
RefseqXP_018441729.10.0PREDICTED: transcription factor bHLH93-like isoform X1
RefseqXP_018441730.10.0PREDICTED: transcription factor bHLH93-like isoform X1
RefseqXP_018441731.10.0PREDICTED: transcription factor bHLH93-like isoform X1
RefseqXP_018441732.10.0PREDICTED: transcription factor bHLH93-like isoform X2
RefseqXP_018441881.10.0PREDICTED: transcription factor bHLH93-like isoform X1
RefseqXP_018441882.10.0PREDICTED: transcription factor bHLH93-like isoform X1
RefseqXP_018441883.10.0PREDICTED: transcription factor bHLH93-like isoform X1
RefseqXP_018441884.10.0PREDICTED: transcription factor bHLH93-like isoform X1
RefseqXP_018441885.10.0PREDICTED: transcription factor bHLH93-like isoform X2
SwissprotQ9LSL10.0BH093_ARATH; Transcription factor bHLH93
TrEMBLM4ESS20.0M4ESS2_BRARP; Uncharacterized protein
STRINGBra031852.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.10.0beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]