PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00854.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 345aa    MW: 36766.8 Da    PI: 6.8801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00854.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH512.7e-16179225455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Rsa1.0_00854.1_g00003.1 179 VHNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 225
                              6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.79E-18171229No hitNo description
SuperFamilySSF474594.71E-20173235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.063175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-19176235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-14179225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-18181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MADKKLISSP SSTTSIYDTR SNNSNHHHHH PPSSSDEISL FLRHIIDRSS PLPSYYSPAT  60
MTTAVHGEPH AGNSICFVSP QTSKRSAGFS EVLVGSGVGS SSAACYGFSG GGGGGGNNIA  120
QGNSSGTRVS SSSVGASGNE TDEYDCESEE GVEAVVDDEL PIKSGPSRSS SKRCRAAEVH  180
NLSEKRRRSR INEKMKALQS LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LTMRNGINLH  240
PLCLPGTALH PLQLSQLRPG VPPEATNDSL LNAPAMINTG ASSYALEPSI RSHFAPFPLL  300
TPPVEMSCEG ELTHPRLNIG HSNTNLNGGQ APFNGQQPDI KDRLT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9210900.0KF921090.1 Brassica oleracea var. capitata bHLH transcription factor SPT mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628223.10.0PREDICTED: transcription factor SPATULA-like isoform X2
SwissprotQ9FUA41e-143SPT_ARATH; Transcription factor SPATULA
TrEMBLA0A078GCN80.0A0A078GCN8_BRANA; BnaC03g61610D protein
STRINGBra010591.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41992754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-121bHLH family protein