PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00824.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 92aa    MW: 10437.8 Da    PI: 8.5138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00824.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.59.8e-0822591854
                             HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                             +   +Lr++lP+   +++s K+s + +L+++++YI++L
  Rsa1.0_00824.1_g00003.1 22 DLVTKLRQILPEiGQRGRSDKVSASKVLQETCNYIRNL 59
                             66679*******999*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.782459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-71879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-72082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-52059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSNRRSRQST SAPRISDDQI IDLVTKLRQI LPEIGQRGRS DKVSASKVLQ ETCNYIRNLN  60
REVDNLSERL AQLLESVDEN SPEAAVIRSL LM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590340.19e-49PREDICTED: transcription factor PRE1
RefseqXP_013651848.19e-49PREDICTED: transcription factor PRE1
RefseqXP_013651849.19e-49PREDICTED: transcription factor PRE1
RefseqXP_013719104.19e-49PREDICTED: transcription factor PRE1
SwissprotQ9LJX13e-50PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A087GTI38e-54A0A087GTI3_ARAAL; Uncharacterized protein
STRINGAT3G28857.17e-48(Arabidopsis thaliana)
STRINGscaffold_704049.18e-48(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.12e-51bHLH family protein