PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00820.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 214aa    MW: 24150.6 Da    PI: 7.7299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00820.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-1064110554
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 rE++RR+ +N++f  L + l +    + +K +K +iL  A++ +++L
  Rsa1.0_00820.1_g00014.1  64 RACREKKRREMLNDKFMDLSSFLEPT---RTPKTDKPAILDDAIRVVNQL 110
                              568**********************9...9****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1251124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.33E-757111No hitNo description
PROSITE profilePS5088812.2959110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-765110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-865116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1166132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MCNTAATLSL KLDSIGFGSS QLENEQVCCG VVEINSSSSV KEELEEECSR KRGRSGSCSK  60
PGTRACREKK RREMLNDKFM DLSSFLEPTR TPKTDKPAIL DDAIRVVNQL RGEAHELKET  120
NQKLLEEIKT LKAEKNELRE EKLVLKADKE KMEQQLKSIP SPGFMPPHPA AFHQNKMAVY  180
ASYGYYPNMP MMPYLLPPSQ RDTSQDQQNC SFAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14971RKRGRSGSCSKPGTRACREKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00820.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486282.11e-150PREDICTED: transcription factor bHLH34
SwissprotQ9LTC78e-96BH034_ARATH; Transcription factor bHLH34
TrEMBLM4DEK11e-130M4DEK1_BRARP; Uncharacterized protein
STRINGBra014923.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40262653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23210.11e-71bHLH family protein
Publications ? help Back to Top
  1. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  2. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]