PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00815.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 568aa    MW: 62166.5 Da    PI: 5.0486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00815.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12395441455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L+
  Rsa1.0_00815.1_g00003.1 395 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINELE 441
                              799***********************6.....5****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.9E-5644228IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.37E-17390456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.111391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.87E-14394441No hitNo description
Gene3DG3DSA:4.10.280.105.9E-17395461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10395441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-15397446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MRNLWATDDN TSMMEAFLTS SDMSALWLQE TSATAPAGFN QETLQQRLQA LIEGTNEGWT  60
YAIFWQPSYD FSGAPVLGWG DGYYIGEEDK GKPKQRSTPL PFSTPADQEY RKKVLRELNS  120
LISGGGGPVD DAVDEEVTDT EWFFLVSMTQ SFASGAGLAG KAFSTGNVVW VSGSDQLSGS  180
SCERAKQGGV FGMQTIACIP SVNGVVELGS TEQIRRSSDL MNKVRLLFNF DVGTNWNLQG  240
ENDPSVWIND PIGASEPGNG QFYSKFENGG SSSTITGNPN HDSTLSPVHS QTLNPNFNNN  300
FSGEMNFSTS SKPRPGEILS FGNNGKRSSM NPDPIQFENK RKNSLGLIDD KVLSFGGGGE  360
TDHSDLEASV VKETPEKRPK KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN  420
VSKMDKASLL GDAIAYINEL ELNVNKTESE KIKIKNQLEE VKMELAGRKA STCGDLSSSS  480
SSSSATAPVG MEIEVKVMGW DAMIRVESSK RNHPAARLMS ALMDLELEVS HASMSVVNDL  540
MIQQATVKMG FRIYTQDQLR ASLISKIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A4e-7332245227Transcription factor MYC3
4ywc_A4e-7332245227Transcription factor MYC3
4ywc_B4e-7332245227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376384KRPKKRGRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605028.10.0PREDICTED: transcription factor MYC2-like
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A0D3DKU70.0A0A0D3DKU7_BRAOL; Uncharacterized protein
STRINGBra010178.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein