PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00796.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 302aa    MW: 34194.7 Da    PI: 6.5577
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00796.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.22.9e-27109170159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDg++WrKYGqK++ g++fpr+YYrCt++   gC+++k+v+rs+e++ ++ei Y+g H ++
  Rsa1.0_00796.1_g00007.1 109 LDDGFSWRKYGQKDILGAKFPRGYYRCTYRksqGCEATKQVQRSNENQMLFEISYRGIHSCS 170
                              59***************************98889*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.609104168IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-26106171IPR003657WRKY domain
SuperFamilySSF1182907.19E-24108171IPR003657WRKY domain
SMARTSM007747.6E-39109171IPR003657WRKY domain
PfamPF031064.4E-25110169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKKEIHELMT EGIDYAHQLK SQLGSSSSDL ESREHLAKKI LESYHKSLTI MNHSGELEQV  60
SPHIHGGGSP KSDDSDQEHH QTITSSKKSM PRWTEKVRIT PGVEIDRMLD DGFSWRKYGQ  120
KDILGAKFPR GYYRCTYRKS QGCEATKQVQ RSNENQMLFE ISYRGIHSCS QAANVRSAIP  180
VRVLEPDQTQ GHENLEMVKE SLDTDNHNYN HQPHLHQSMQ YPLSSTPTLE SNNMMLQLRD  240
QNIDFFGSTS FSSDLGANVN YDYLASHNVG SVSHSTSNSP SESPFESFDP NNPFKGFGGF  300
YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-191091671474Disease resistance protein RRS1
5w3x_D3e-191091671474Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00796.1_g00007.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300470.0KF430047.1 Brassica rapa WRKY transcription factor 30 (WRKY30) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481348.10.0PREDICTED: probable WRKY transcription factor 30
SwissprotQ9FL621e-149WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBLA0A0D3DD660.0A0A0D3DD66_BRAOL; Uncharacterized protein
STRINGBo7g097170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-140WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Jiang W,Wu J,Zhang Y,Yin L,Lu J
    Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses.
    Protoplasma, 2015. 252(5): p. 1361-74
    [PMID:25643917]
  2. Kanofsky K,Bahlmann AK,Hehl R,Dong DX
    Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters.
    Plant Cell Rep., 2017. 36(6): p. 971-986
    [PMID:28341984]