PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00793.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 230aa    MW: 24835.7 Da    PI: 12.3074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00793.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-051752091655
                              HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +N +++ L +l+P +     kK s   iLe+A++YI+ L+
  Rsa1.0_00793.1_g00004.1 175 VNRKISVLGRLVPGC-----KKESVPVILEEATDYIQALE 209
                              79************9.....89***************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-9159226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.477159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-8176217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MADTEQPPTN LNRSSTALVR RKKSLSASSP SSSRGNAASV STGDGESHAR WRSEKQHRNY  60
SAKLIQALKQ VRRGSSSTFS AAATSPPPMA AQKRGKAVRE AADRALAVSA RGRTLWSRAI  120
LANRIKLKFR KHKRPRRTVI PAVTTVVAVT GASSGGGRKR RVSVVRLNKK SLPTVNRKIS  180
VLGRLVPGCK KESVPVILEE ATDYIQALEM QVRAMKSLVE LLSGSAPPPI
Functional Description ? help Back to Top
Source Description
UniProtbHLH transcription factor that binds DNA on specific sequence 5'-CANNTG-3' in target gene promoters (PubMed:24009530). Negatively regulates brassinosteroid signaling (PubMed:20023194). Together with BHLH148/RITF1, regulates the transcription of several genes involved in the detoxification of reactive oxygen species (ROS) generated by salt (NaCl) stress. Confers tolerance to salt and to the oxidative stress-inducing reagents hydrogen peroxide H(2)O(2) and methyl viologen (MV) (PubMed:24009530). {ECO:0000269|PubMed:20023194, ECO:0000269|PubMed:24009530}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00793.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salt (NaCl) stress. {ECO:0000269|PubMed:24009530}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486816.11e-163PREDICTED: transcription factor bHLH148
SwissprotQ9C8Z94e-78BH148_ARATH; Transcription factor bHLH148
TrEMBLM4ELC21e-105M4ELC2_BRARP; Uncharacterized protein
STRINGBra029590.1-P1e-106(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61571318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.22e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sukweenadhi J, et al.
    Paenibacillus yonginensis DCY84(T) induces changes in Arabidopsis thaliana gene expression against aluminum, drought, and salt stress.
    Microbiol. Res., 2015. 172: p. 7-15
    [PMID:25721473]