PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00769.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 372aa    MW: 41003.8 Da    PI: 6.9087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00769.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12309354655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR +i +++ +L++l+P+     ++  + a++L +Av+YIk+Lq
  Rsa1.0_00769.1_g00009.1 309 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 354
                              689*********************7....79******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.072303353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16306369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.74E-12307358No hitNo description
Gene3DG3DSA:4.10.280.102.0E-15308365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MESEFQQHHF LLHDHQHQRP PRTSGLARYQ SAPSSYFSSF GESIEEFLDR PTSPETERIL  60
SGFLQTTDTS NTVDSFLHHT FSETDEKKPP EVKTEETTEV DDIPATVAMD VVEIPAAPGS  120
SGYASVVRSL GQNNKRPRER DDRTPPANNL ARHNSSPAGL FSSIDVETAY AAVMKNMGGF  180
GGGVNVMNTE ASSLTRGTKL PPPSMGTIPE IDDVKPVFSS RLPPRTLSGG FNRSFGNEGS  240
ASSKLIARTQ SGGLDQYKTK DEDSSASRRP PLAHHMSLPK SLSDIEQLLS DSIPCKIRAK  300
RGCATHPRSI AERVRRTKIS ERMRKLQDLV PNMDTQTNTA DMLDLAVQYI KDLQEQVKGL  360
EESRARCRCS CA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587853.10.0PREDICTED: transcription factor bHLH122
RefseqXP_013731677.10.0PREDICTED: transcription factor bHLH122-like
SwissprotQ9C6900.0BH122_ARATH; Transcription factor bHLH122
TrEMBLA0A078GKU60.0A0A078GKU6_BRANA; BnaC06g04380D protein
TrEMBLA0A0D3CPX90.0A0A0D3CPX9_BRAOL; Uncharacterized protein
STRINGBra018896.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-178bHLH family protein