PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00760.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 268aa    MW: 31114.6 Da    PI: 9.2645
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00760.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-071351761055
                              HHHHHH.HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdr.iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +rRRd+ + +++ +L++l+P++      K + +++L k++eY+k+Lq
  Rsa1.0_00760.1_g00003.1 135 KRRRDEmMSNKMRTLQQLVPNC-----HKTDMVSVLDKTIEYMKNLQ 176
                              67777626889**********9.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.906126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-7131183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-11131184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-7135178No hitNo description
PfamPF000101.4E-4135176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-10135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009642Biological Processresponse to light intensity
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003712Molecular Functiontranscription cofactor activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGLGWRNDVE SLAVEDQDIS VRARSGKDRQ INGLKWSYHY FDRDQADVHV QIVPDISKEE  60
DNLEKNMTSV VPDEHSETGD HHLHIKDYSD SSYNRLYLRN RHAKRKRRRV QIFSDDESED  120
FTRKVPLVTR KSSKKRRRDE MMSNKMRTLQ QLVPNCHKTD MVSVLDKTIE YMKNLQLQFQ  180
VMSIMGMNPY IPQAILNFGM HNHLLTAMGI AHGLNPVKQM TLSPVLPWSW LSPPFINLSF  240
PYSSHQSLLT TPASSQYLCG LVPCPKFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108KRKRRR
2104108RKRRR
3105109KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118778.11e-151PREDICTED: transcription factor HFR1-like isoform X1
RefseqXP_009118780.11e-151PREDICTED: transcription factor HFR1-like isoform X2
SwissprotQ9FE221e-121HFR1_ARATH; Transcription factor HFR1
TrEMBLA0A078H3Q21e-151A0A078H3Q2_BRANA; BnaA09g51400D protein
STRINGAT1G02340.11e-119(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140151624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02340.11e-109bHLH family protein