PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00718.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 359aa    MW: 40339.9 Da    PI: 6.8369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00718.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH57.13.3e-18207256255
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r +h++ E+rRR++iN++f++Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Rsa1.0_00718.1_g00012.1 207 RSKHSATEQRRRSKINDRFQTLRQLIPNS----DQKRDKASFLLEVIEYIHFLQ 256
                              889*************************9....9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.5E-22204263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-18205264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.257205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-16207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.42E-16207259No hitNo description
SMARTSM003534.3E-14211261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MELPQSRVIE AQGGYPKTHD FLQPLERVGT RASAKEEGTR GSVDTAETSS QLKSPYVHNQ  60
HVLPGGIGTY TISHMPYLYH NHLQRVPKPK VSQMFKVSQA SCNERNAVED NSVSNCSSYA  120
ANNGFTLWNE SVEKKGHTRK RQQSQSFMDM IKSAKGSSQE DDLDDDDEEF VTNKGNNTST  180
SQCQRVDLRV RVDGKGHCNK QMPNTPRSKH SATEQRRRSK INDRFQTLRQ LIPNSDQKRD  240
KASFLLEVIE YIHFLQEKVD KHEPPEGAVP VLAEAQAVDM EHQQCLKRAM DTTNSFPVLG  300
QRNSFFSPES PQLCPISSPD VAAMDCENLR EEKEVEELSI HKGTISISSV YSQGTATTI
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00718.1_g00012.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1496350.0AC149635.1 Genomic sequence for broccoli [Brassica oleracea L. (Italica group)] BAC clone B19N3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438685.10.0PREDICTED: transcription factor BIM1-like isoform X2
SwissprotQ9LEZ36e-93BIM1_ARATH; Transcription factor BIM1
TrEMBLM4EKN70.0M4EKN7_BRARP; Uncharacterized protein
STRINGBra029354.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1880578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.62e-93bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]