PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00710.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 287aa    MW: 32159.9 Da    PI: 5.035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00710.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.1e-1893142255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdps+   r+r +lg+f taeeAa  +++a+ +l+g
  Rsa1.0_00710.1_g00014.1  93 KYRGVRQRP-WGKYAAEIRDPST---RTRLWLGTFATAEEAAIGYDRAAIRLKG 142
                              8********.**********976...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.91E-3193149No hitNo description
SuperFamilySSF541716.02E-2093150IPR016177DNA-binding domain
PfamPF008474.8E-1193142IPR001471AP2/ERF domain
SMARTSM003803.2E-3593156IPR001471AP2/ERF domain
PROSITE profilePS5103221.89193150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-2993149IPR001471AP2/ERF domain
PRINTSPR003675.3E-1094105IPR001471AP2/ERF domain
PRINTSPR003675.3E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRSRERKVKY TVHRKTTPFN GLPKVVRITV TDPFATDSSS DEENDKFVAP TTSVKRYVEE  60
VRFEGAAKRE KTVRKATNKA AAKGDDGTVK PVKYRGVRQR PWGKYAAEIR DPSTRTRLWL  120
GTFATAEEAA IGYDRAAIRL KGPKALTNFL TPPVIDLETV SGSESARESR STSICSPTSV  180
LRFDRNEETE YRTEEPVKLS LTESKDAASS SLSDPLFLSD LFGVGDCLWD SEITTDNLFL  240
DEIQTLPNIT TNTISSEYPE SFPLSVIGDL SSCSWDVDEF FKDQWLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2194149359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2194149662ATERF1
3gcc_A2e-2194149662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00710.1_g00014.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475250.10.0PREDICTED: ethylene-responsive transcription factor CRF5-like
RefseqXP_018475258.10.0PREDICTED: ethylene-responsive transcription factor CRF5-like
SwissprotO823391e-105CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLV4KMY71e-140V4KMY7_EUTSA; Uncharacterized protein
STRINGXP_006397817.11e-141(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.11e-101cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]