PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00670.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 310aa    MW: 34575.5 Da    PI: 8.1632
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00670.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.26.2e-34732082119
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 
                               g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl++ak++i+el+ ++ s+++++  ++++s  + s++
  Rsa1.0_00670.1_g00003.1  73 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGLDQPSKAVDWLLNAAKEEIDELPPLPVSPETFSlfNHHQSFLNLSQP 158
                              689*************************************************************9999988877777777777755 PP

                      TCP  86 ssg...............kaaksaa.kskksqksaasalnlak.esrakar 119
                                +               +  ++++  ++ +++++ s   +++ e++++++
  Rsa1.0_00670.1_g00003.1 159 PGQdptqlgfkingcvedQ-PNTTTsREETNSHHTGSYGTYQNmEQHQQQH 208
                              5557788888887777642.2222223333444443333333322222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.4E-3075194IPR005333Transcription factor, TCP
PROSITE profilePS5136931.74875133IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MNTVPWRDAN DDVSGGIRTR RDGEVQKDTE EAVVATSGKP VIKKPPTSIS SSSSSSSWMK  60
SKDPRIVRVS RAFGGKDRHS KVCTLRGLRD RRVRLSVPTA IQLYDLQERL GLDQPSKAVD  120
WLLNAAKEEI DELPPLPVSP ETFSLFNHHQ SFLNLSQPPG QDPTQLGFKI NGCVEDQPNT  180
TTSREETNSH HTGSYGTYQN MEQHQQQHTR FQADYPHHHQ HQLHSLVPIQ SQFLVCPVTA  240
PSTTTTIQSL FPSSSSAGSR TMETTDPRQM VSHFQMPLMG SFSSSQNISS LYSLLHGSSN  300
PMPSVQFDRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1880134155Putative transcription factor PCF6
5zkt_B1e-1880134155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00670.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324590.0AC232459.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB020F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489088.10.0PREDICTED: transcription factor TCP13
SwissprotQ9S7W51e-154TCP13_ARATH; Transcription factor TCP13
TrEMBLA0A0D3CNA70.0A0A0D3CNA7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ERH90.0A0A3P6ERH9_BRAOL; Uncharacterized protein (Fragment)
STRINGBo5g152840.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.21e-147plastid transcription factor 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Yamburenko MV,Zubo YO,Börner T
    Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.
    Plant J., 2015. 82(6): p. 1030-41
    [PMID:25976841]
  3. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]