PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00657.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 238aa    MW: 24933.8 Da    PI: 9.8483
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00657.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.23.4e-39251942108
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                              a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++   + s  s+s   
  Rsa1.0_00657.1_g00006.1  25 AVKKPPTKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStA-SLSTTSSS--- 106
                              79**************************************************************9999987732.22222222... PP

                      TCP  87 sg..................................................................kaaksaa.kskksqksaa 105
                               +                                                                  ++++++   ++++q++++
  Rsa1.0_00657.1_g00006.1 107 -PftlgkrvraeeggesgpgggeltvgptmgasvmsggggfwavparqdfgqvwsfaagatpemlftqQQQAATLfVRQQQQQQQQ 191
                              .1222234555566667778888888888888888888888888888888888887776666666665222222222222222222 PP

                      TCP 106 sal 108
                              +  
  Rsa1.0_00657.1_g00006.1 192 ASA 194
                              223 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2873185IPR017887Transcription factor TCP subgroup
PfamPF036344.7E-3431181IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MENNDGAMTN GVIVEHTSAK GPLNAVKKPP TKDRHSKVDG RGRRIRMPII CAARVFQLTR  60
ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTASL STTSSSPFTL GKRVRAEEGG  120
ESGPGGGELT VGPTMGASVM SGGGGFWAVP ARQDFGQVWS FAAGATPEML FTQQQQAATL  180
FVRQQQQQQQ QASAAVAAMG EASAARVGNY LPGHHLNLLA SLSGGNTGSG RREEDDSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00657.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472268.11e-174PREDICTED: transcription factor TCP21
SwissprotQ9FTA21e-111TCP21_ARATH; Transcription factor TCP21
TrEMBLR0GX401e-117R0GX40_9BRAS; Uncharacterized protein
STRINGCagra.1365s0040.1.p1e-118(Capsella grandiflora)
STRINGXP_006288561.11e-118(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.13e-76TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Ng DW,Chen HH,Chen ZJ
    Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
    Sci Rep, 2017. 7: p. 45087
    [PMID:28345627]
  3. Lee CM, et al.
    Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
    Plant Physiol., 2018. 177(3): p. 1170-1186
    [PMID:29794020]