PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00629.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 337aa    MW: 37405.9 Da    PI: 6.7039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00629.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08252292954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  Rsa1.0_00629.1_g00004.1 252 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 292
                              69******************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-13248307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-13249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-11249297No hitNo description
Gene3DG3DSA:4.10.280.105.2E-12251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-6252292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEGLESVYAQ AIYGMNKTME HHQGSDLVWG GNELMPRELC SSSHQLINPN LRSCFMSDLG  60
VINEIQHQQH VGNRAASIDP SSLECLLSAT TNTSTEDDEG ISALFSDCQT LWSFGGGGVS  120
SAESENKEIT TETATTKPKS LKRNRDETGS HFRLVHHPQD ETEKGSFKLI YDENQPKKKP  180
RTEKGGGSSN ISFGHSASLS DNAEPDAEAI AQMKEMIYRA AAFRPVNFGL ETVEKPKRKN  240
VKISTDPQTV AARQRRERIS EKIRVLQTLV PGGTKMDTAS MLDEAANYLK FLRAQVKALE  300
NLRPKLDPTN LSFSSPLFHP SFLPMQNPNQ IHHHPEC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175181PKKKPRT
2252257RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026861e-159CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankBT0203641e-159BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds.
GenBankAP0013051e-159AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9.
GenBankAF4886171e-159AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584279.10.0PREDICTED: transcription factor bHLH87
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A0D3CHK70.0A0A0D3CHK7_BRAOL; Uncharacterized protein
STRINGBra031275.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.10.0bHLH family protein