PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00596.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 119aa    MW: 13909.8 Da    PI: 12.1226
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00596.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.35.1e-1081114235
                      AP2   2 gykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgk 35 
                              +++GVr+++ +g+W+AeIr+ ++ +g r  r++lg+
  Rsa1.0_00596.1_g00016.1  81 KFRGVRQRP-WGKWAAEIRCGKSrDG-RpLRIWLGT 114
                              89*******.**********655577.78*****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.1E-241117IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.106.3E-1081114IPR001471AP2/ERF domain
PfamPF008471.2E-481114IPR001471AP2/ERF domain
PROSITE profilePS5103212.53681119IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-581114IPR016177DNA-binding domain
PRINTSPR003677.7E-58293IPR001471AP2/ERF domain
PRINTSPR003677.7E-5108119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MKRIVRISFT DAEATDSSSS EEDEQTNAAK SPPRRRRGKR FVNEIVIDPS ADNNNNNNRD  60
RGKTRFKIRI PARVNKKKGE KFRGVRQRPW GKWAAEIRCG KSRDGRPLRI WLGTRRRFS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00596.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466127.13e-68PREDICTED: ethylene-responsive transcription factor ERF069-like
SwissprotQ9C9957e-37ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A0D3DR003e-55A0A0D3DR00_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FVU73e-55A0A3P6FVU7_BRAOL; Uncharacterized protein
STRINGBo8g071630.15e-56(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.14e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]