PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00593.1_g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 282aa    MW: 32363.7 Da    PI: 5.0452
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00593.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-18133183256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ +  l+g+
  Rsa1.0_00593.1_g00021.1 133 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFILRGH 183
                              59****999.**********954...4********************99999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.78E-33132192No hitNo description
SMARTSM003805.5E-35133196IPR001471AP2/ERF domain
PROSITE profilePS5103223.064133190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-31133192IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22133191IPR016177DNA-binding domain
PRINTSPR003672.5E-11134145IPR001471AP2/ERF domain
PfamPF008471.4E-12134182IPR001471AP2/ERF domain
PRINTSPR003672.5E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDFDEELNLC ITKGKNIDPS FEEASSTTSS RSIKKMRDTD HRPKPYFPFS SFSSSDLSVG  60
FPFTLDPTIR HQQQQHFGYV QQRDQTMQGQ NQMISFSPQQ PEQQYMTKYW SDTFNQSPRM  120
NQESVQPYSA TKLYRGVRQR QWGKWVAEIR KPRSRARLWL GTFDTAEEAA MAYDRQAFIL  180
RGHNATLNFP EHYANREVEL HDSTGSLDQK QPEVPQLNEV NLEGKDEAVS DCGVEDGMAE  240
AWLNAVTSGW GPESPLWDDL DSSHFPQCSS SSSASCPMRP YF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20132190160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-20132190463ATERF1
3gcc_A1e-20132190463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13343KKMRDTDHRPK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00593.1_g00021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894411e-170AC189441.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481042.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
SwissprotQ9M0J31e-129ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A0D3DGJ21e-159A0A0D3DGJ2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F4Q31e-159A0A3P6F4Q3_BRAOL; Uncharacterized protein
STRINGBo7g111910.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-117ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]