PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00565.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 323aa    MW: 36058.8 Da    PI: 6.4379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00565.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.11e-1585136155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r +h ++Er+RR+++N+ ++ Lr+l+P++    s+K + a+i+  A+++Ik+L+
  Rsa1.0_00565.1_g00006.1  85 QRITHIAVERNRRRQMNQHLSVLRSLMPQP---FSQKGDQASIVGGAIDFIKELE 136
                              799***************************...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-1383138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-1283133No hitNo description
SuperFamilySSF474596.02E-1683148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77784135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-1385136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-1190141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTLEALSSNG LLNFLLSESL SPTPFKSLLD LEPSPENDII ISKNTIPEMS PQEPASRQPP  60
PASRGKKRRR RKPRVCKNEE EAENQRITHI AVERNRRRQM NQHLSVLRSL MPQPFSQKGD  120
QASIVGGAID FIKELEHELL SLEAQKLQKD KLNQTVTSST SQDSNCEPEN PHPSLSQFFL  180
HSYDPSQENR NGSTSSVKTA MEDLEVTLIE THANIRILSR RRGFQWTSVV ATTGPPQLSK  240
LVAALQSLSL SVLHLSVTTL ETFAIYSIST KVEESCQLSS VDDIAGAVHH MLSIIEEEPF  300
CCSTMPELPF TFPLNHTNVT HSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571KKRRRRK
26572KKRRRRKP
36671KRRRRK
46773RRRRKPR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00565.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535550.0AK353555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-J01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480341.10.0PREDICTED: transcription factor bHLH71
SwissprotQ56XR01e-176BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A078JEC00.0A0A078JEC0_BRANA; BnaA06g40430D protein
TrEMBLA0A397Z8A10.0A0A397Z8A1_BRACM; Uncharacterized protein
STRINGBo7g075600.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-151beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]