PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00562.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 281aa    MW: 31724.4 Da    PI: 4.5543
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00562.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.22.3e-14102148252
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                              +  GVr++k +g+W+AeIr+p     + +r +lg++ t e+Aa a+   +++
  Rsa1.0_00562.1_g00012.1 102 KPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYETLEQAAHAYATKKLE 148
                              789*****9.**********72....36******************877665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.22E-18101142No hitNo description
PfamPF008474.9E-9102143IPR001471AP2/ERF domain
SMARTSM003802.8E-13102165IPR001471AP2/ERF domain
PROSITE profilePS5103217.952102159IPR001471AP2/ERF domain
PRINTSPR003671.3E-6103114IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-14104149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-20105149IPR001471AP2/ERF domain
PRINTSPR003671.3E-6125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAEQKKRSYL GATKPCKNLK RNTFQLNRLP GLSEDLKTMR KLRFVVSDPY ATDYSSSEEE  60
EETYQTRKRY VCEIDRPFSQ SESESSSCHN DESKAKTSSV KKPVGVRQRK WGKWAAEIRH  120
PITKTRTWLG TYETLEQAAH AYATKKLEFD ALSAGASSEN ALSDESDSAS GSNVEAVSSI  180
DLDKKLIDFN LTDLQIPDMG FFIDESLISN ACELDFLLPE ESDRFLDDMN IIRLECDGPS  240
DLPDYDFSDV EIDLGLIGNT IDNKFAFFDH HLATPLNIAC L
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00562.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895736e-72AC189573.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437105.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
SwissprotQ9LUA21e-104EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLA0A398AHS71e-149A0A398AHS7_BRACM; Uncharacterized protein
STRINGBo2g138790.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-100ERF family protein