PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00561.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 677aa    MW: 76423.2 Da    PI: 5.0828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00561.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.7e-12104155155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              ++++h  +Er+RR+++N+ +  Lr+l+P     + k+ + a+i   +veYI++Lq
  Rsa1.0_00561.1_g00009.1 104 QKMSHVNVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVEYISELQ 155
                              6899*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.01E-11101159No hitNo description
Gene3DG3DSA:4.10.280.101.4E-12102158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-17102178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.148103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-10104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-11109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MQETIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPM AASTPKDGTT SSKELVKNQN  60
YETSSPKKKR KRLETGKEEE EEEEEEEDED GEGEEEDNKQ DGQQKMSHVN VERNRRKQMN  120
EHLTVLRSLM PCFYVKRGDQ ASIIGGVVEY ISELQQVLQS LEAKKQRKTY AEVLSPRLVP  180
SPRPSPPLLS PRKPPLSPRI SHHHLLLPPI SPRTPLPTSP YGAHPPQLPL IPQPPRSYSL  240
GDLPPYSPAS SSSSPSVSSN HESSLINELV ANSKSDLADV EVKFSGANVL LKTVSHNIPG  300
QVMKIIAALE DLALEILQVN INTVEETMLN SFTIKVGIEC QLSGEELAQQ IQQTYRKCTA  360
EIIAQYERDQ EKEAKKSRPE RDKGKKSLSK EETPRPERDK SKKPLSKEET PSTRTEEKRN  420
KGLERWLESF KAKIHQRISN PRPSPVSAED QEAKDNEPEL SSVYVRAEYM DDQLHQEKDL  480
CPIFDEEDEP EAEVFSWLAK LVEPFVCKEY DPVELLRPEE GLQHFIFEAG IGVCAHKNHR  540
NTLAEQNHVI HSRQDLRTNL FKGGEDDATQ ISSYVSTRSL RFPLLPLQFI ISAFYGTTIQ  600
YTDPHGVVPI KIFQSNHVHG RIMECMRDYK SKEETVKYLL VPVKVEGVKI SPEPVVSGND  660
AIFKISALRV KISLEEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16572PKKKRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532090.0AK353209.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-22-L21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119864.10.0PREDICTED: transcription factor SPEECHLESS-like
SwissprotQ700C71e-166SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A078FND90.0A0A078FND9_BRANA; BnaA10g06580D protein
STRINGBra003073.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78952740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-143bHLH family protein