PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00539.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 505aa    MW: 55547.1 Da    PI: 8.3407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00539.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.17.7e-33174231260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  +++++ei+Y+g+Hnh+k
  Rsa1.0_00539.1_g00010.1 174 EDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-EGQITEIVYKGSHNHPK 231
                              7****************************************.***************85 PP

2WRKY105.42.9e-33345403159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+
  Rsa1.0_00539.1_g00010.1 345 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASQDLRAVITTYEGKHNHD 403
                              59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-27166232IPR003657WRKY domain
SMARTSM007741.0E-33173231IPR003657WRKY domain
SuperFamilySSF1182902.88E-24173232IPR003657WRKY domain
PfamPF031067.5E-25174230IPR003657WRKY domain
PROSITE profilePS5081122.905174232IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-37330405IPR003657WRKY domain
SuperFamilySSF1182904.71E-29337405IPR003657WRKY domain
PROSITE profilePS5081138.124340405IPR003657WRKY domain
SMARTSM007744.6E-38345404IPR003657WRKY domain
PfamPF031061.5E-25346403IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MAASSLLPID NNRTRQNMSG SANWSQQSGR RSSTTALEDL EIPKFRSFAP SSVSISPSTC  60
FSPSIFLDSP AFVSSSANVL ASPTTGALIT NESNQKNITK EEKNNNNISY FDFSFQTQPS  120
AVSAPTATTA ANSSIFQSQE QERKNQSDQW SQTLNNSNTH QAVSYNGREQ RKGEDGYNWR  180
KYGQKQVKGS ENPRSYYKCT FPSCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS  240
SSSSSTFHSA AFNASLDHHG SSNNSFNHSD SLAIQQDDNT TSGSVGDDEF EQGSSVVSRE  300
EECGSEPEAK RWKGESETNG GNGNGSKTVR EPRIVVQTTS DIDILDDGYR WRKYGQKVVK  360
GNPNPRSYYK CTTIGCPVRK HVERASQDLR AVITTYEGKH NHDVPAARGS GYATNRPVQD  420
PSSAPIRPAA ISGHSNYTTS SRAPYTLQML QNNNTNAGPF GYAMNNHNNN NNNIQTQQNE  480
FVGGFSRAKE EPNDESSSFF DSFLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A4e-38174406878Probable WRKY transcription factor 4
1wj2_A4e-38174406878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526830.0AK352683.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-H12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133259.10.0PREDICTED: probable WRKY transcription factor 33
SwissprotQ8S8P50.0WRK33_ARATH; Probable WRKY transcription factor 33
TrEMBLC4N0W80.0C4N0W8_BRANA; WRKY33-1 transcription factor
STRINGBra000064.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45832755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.10.0WRKY DNA-binding protein 33