PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00530.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 250aa    MW: 27603.5 Da    PI: 4.8668
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00530.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13184229655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Rsa1.0_00530.1_g00004.1 184 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKALQ 229
                              689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.818178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-16181240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.74E-12182233No hitNo description
Gene3DG3DSA:4.10.280.105.4E-16183241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10184229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-12184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQSTHGDGGG EGGSGEASRS GLSRIRSAPA TWIETLLEDD EEEDDLKPNL CLTELLTGNS  60
TRDSFEFPSS SSVEQGLYSH QGGGFHRQNS TPADFLSGSG AGSDGYFSNF GIPANYDYLT  120
PNVDIAAASK RSREIEAHFS SQMKEEQMSG GVSGMVDINM DKFLEDSVPC RVRAKRGCAT  180
HPRSIAERVR RTRISDRIRK LQELVPNMDK QTNTADMLEE AVEYVKALQS KIQELTEQQR  240
RCICKPKEEQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107915.11e-157PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P81e-135BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A078DR231e-156A0A078DR23_BRANA; BnaC08g06800D protein
TrEMBLA0A0D3DKJ61e-156A0A0D3DKJ6_BRAOL; Uncharacterized protein
STRINGBra036760.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-120bHLH family protein