PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00529.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 348aa    MW: 38461.2 Da    PI: 4.7252
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00529.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102783181055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Rsa1.0_00529.1_g00009.1 278 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 318
                              9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-14269335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-12273333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-11277322No hitNo description
PfamPF000101.3E-7278318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEAMGEWSNN LGGMYTYATE ETDFMNQLLA SYDHPGTGSS SGTEGGDQQG LYWSLGSNHN  60
HLTLMPEASS FGFSGESSSY SVGNRGYYAV VPPAVEENNN GSMGFRMEDV TINTNSFLVG  120
EETSECDVEK YSSGKTLLPL ETVVENHDDE ESMLQSETTT DHHRSLTGSK KRSRATSTDK  180
NKRAKVGKRG QKSIEMTCDN NNGSGEEEEG EKVKRRKSGA MMSRQNSSTT FCSEEESQCP  240
SQDIGGEEDE DASKALNLNG KTRASRGAAT DPQSLYARKR RERINERLRI LQNLVPNGTK  300
VDISTMLEEA VHYVKFLQLQ IKLLSSDDQW MYAPIAFNGM DIGLNLPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593795.10.0PREDICTED: transcription factor bHLH85
RefseqXP_013740761.10.0PREDICTED: transcription factor bHLH85-like
SwissprotQ84WK00.0BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A0D3A2520.0A0A0D3A252_BRAOL; Uncharacterized protein
STRINGBra011476.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-178ROOT HAIR DEFECTIVE 6-LIKE 2