PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00517.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 230aa    MW: 25568.2 Da    PI: 10.215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00517.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-08137177954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Rsa1.0_00517.1_g00003.1 137 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 177
                              699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-14129187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14132187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-14134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-6138177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.32E-6151182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDNSDMLMNM MMQQMEKLPD QFSNTNPNPN SHNIMMLSES STHPFFFNPN HTHLPLLDPN  60
LTHHHHQSGL SFRYAPSTSS SLPDKRGGGG DNANMAAMRE MIFRIAVMQP IHIDPESVKP  120
PKRKNVRISK DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKKQ  180
VQSLEEHAVV NGGGMASAQP GVGGGYGGKG GCGTMRSDHH QMLGNAQILR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankBT0106070.0BT010607.1 Arabidopsis thaliana At3g50330 gene, complete cds.
GenBankAL1329760.0AL132976.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F11C1.
GenBankAK1759120.0AK175912.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH037), complete cds, clone: RAFL22-57-C09.
GenBankAK1756790.0AK175679.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH037), complete cds, clone: RAFL22-18-N14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404040.11e-128hypothetical protein EUTSA_v10011068mg
SwissprotQ9SND41e-113HEC2_ARATH; Transcription factor HEC2
TrEMBLV4M0151e-128V4M015_EUTSA; Uncharacterized protein
STRINGBra030002.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.13e-95bHLH family protein