PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00496.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 287aa    MW: 33012.4 Da    PI: 5.2985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00496.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.53.1e-0581130854
                              HHHHHHHHHHHHHHHHHC..TSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   8 rErrRRdriNsafeeLre..llPk.askapskKlsKaeiLekAveYIksL 54 
                               Er RR + N++f+ Lr+   +P+ +++  +   + a+i+ +A++YIk+L
  Rsa1.0_00496.1_g00004.1  81 TERERRVHFNDRFSILRTsfQIPQrLFSFFAFDSDRASIVGEAIDYIKEL 130
                              59***************955699988888888889999**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.44573130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-775143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-681143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.45E-682135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEVEKGRNIY EEMPCFDPNT PASVTAESSC FSQVQPPQIL VAGSTSNSNC SLDVEEFHLS  60
PQDCPQASPT PLHQFHINPP TERERRVHFN DRFSILRTSF QIPQRLFSFF AFDSDRASIV  120
GEAIDYIKEL LRTIEEFKML LEKKKLEEFR SMKKAKTDGE EEEEDNVSYR QQSELDQSCF  180
NKKSLRCSWL KRKSKVTEVD VRIIDDEVTI KVVQKKKINC LLFTSKVLDQ LKLDLHHVAG  240
RQIGEHYSFL FNAKICEESC VYASGIADTA MEAVEKQYME AVPTNGY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00496.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2516951e-105AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBankAK2285921e-105AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBankBT0057111e-105BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBankBT0086081e-105BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478258.10.0PREDICTED: transcription factor bHLH10-like
SwissprotQ84TK11e-101BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A078FSY81e-109A0A078FSY8_BRANA; BnaC04g42050D protein
TrEMBLA0A0D3C3D51e-109A0A0D3C3D5_BRAOL; Uncharacterized protein
STRINGBo4g176070.11e-110(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.12e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]