PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00490.1_g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 182aa    MW: 19674.8 Da    PI: 4.7793
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00490.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.18.9e-181464255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                              y+GVr+++++ +Wv+eIr+p     r  +r++lg+f t+e+Aa a++ a+++l+g
  Rsa1.0_00490.1_g00020.1 14 LYRGVRQRRNSDKWVSEIREP-----RkpTRIWLGTFSTPEMAAIAYDVAALALKG 64
                             69******************9.....448************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.76E-281374No hitNo description
PfamPF008471.5E-111364IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-271473IPR001471AP2/ERF domain
PROSITE profilePS5103220.9561472IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-191474IPR016177DNA-binding domain
SMARTSM003801.3E-311478IPR001471AP2/ERF domain
PRINTSPR003672.1E-51526IPR001471AP2/ERF domain
PRINTSPR003672.1E-53854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MPGTSKENGG RHPLYRGVRQ RRNSDKWVSE IREPRKPTRI WLGTFSTPEM AAIAYDVAAL  60
ALKGTETEFN FPNSVSSLPV PASMSPGDIQ AAAASAAAAF GAARDAIVRT NNNNASSSSV  120
ERSNVNTSGY MDEDLIFDMP NVLMNMAEGM LLSPPRQSTF DAASDADGYT GGDDYLWNFQ  180
TK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00490.1_g00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069193e-94AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBankAY5608673e-94AY560867.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g36450) mRNA, complete cds.
GenBankCP0026853e-94CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ4466043e-94DQ446604.1 Arabidopsis thaliana clone pENTR221-At2g36450 AP2 domain-containing protein (At2g36450) mRNA, complete cds.
GenBankDQ6530453e-94DQ653045.1 Arabidopsis thaliana clone 0000012250_0000008884 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479913.11e-132PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR08e-88ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A078JYM01e-108A0A078JYM0_BRANA; BnaAnng34830D protein
TrEMBLA0A397ZWF91e-108A0A397ZWF9_BRACM; Uncharacterized protein
TrEMBLM4DL541e-108M4DL54_BRARP; Uncharacterized protein
STRINGBra017235.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.13e-79ERF family protein