PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00479.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 205aa    MW: 22701.5 Da    PI: 7.8246
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00479.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-1856106155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Rsa1.0_00479.1_g00010.1  56 STYRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTPEMAARAHDVAALAIKG 106
                              56*****998.**********854...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.38E-3456116No hitNo description
SuperFamilySSF541718.5E-2256115IPR016177DNA-binding domain
PfamPF008478.6E-1257106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3257115IPR001471AP2/ERF domain
PROSITE profilePS5103222.85357114IPR001471AP2/ERF domain
SMARTSM003808.9E-4057120IPR001471AP2/ERF domain
PRINTSPR003671.8E-105869IPR001471AP2/ERF domain
PRINTSPR003671.8E-108096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MKKLKLIDHS SCRRRYQDPP GHATARTVNN NKNNHNPKKK RVVEEDNDEK IVSKHSTYRG  60
VRMRQWGKWV SEIREPKKKS RIWLGTFSTP EMAARAHDVA ALAIKGGSAH LNFPELAYHL  120
PRPASADPKD IQAAAAAAAA SVAVDMEVET SAPSPASSEP SSLGMTALVD DAFSDLPDLL  180
LDVSHNIDGF WDSYPYEEPF FSGSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1751114872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00479.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8423060.0AY842306.1 Brassica napus transcription factor DREBIII-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467469.11e-115PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ9ZQP33e-88ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLQ5MAR71e-107Q5MAR7_BRANA; BnaAnng37500D protein
STRINGBra005314.1-P1e-106(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.18e-83ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]