PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00469.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 326aa    MW: 35999 Da    PI: 6.8901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00469.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-13274319655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Rsa1.0_00469.1_g00010.1 274 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 319
                              689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-15271323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.44E-13272321No hitNo description
Gene3DG3DSA:4.10.280.109.6E-14273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-13274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-10274319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDSNTRNHLY DPNHTSSSGS GLLRFRSAPS SVLAAFVDDK TGFGSSGRFL NDLNGFDDKS  60
PVSAALPPPP PPPQQPEPSS FLGLPPHYPR QSKGMMMTTI GLDQYLDLNN HHLKPVGSNL  120
LRQSSSPAGT FTNLSGQNGY GYVGEEEEEE EESPSHSNGL RRHSSLSSRP PPSSLGMLSQ  180
IPEIDSESVQ YSHWNDPSSF IHNLSSSSLK TETEDDGKLF HGSHLMSHHL SLPKSSSSSS  240
TASDMVSVDK YLQLQDSVPC KIRAKRGCAT HPRSIAERVR RTKISERMRK LQELVPNMDK  300
QTNTADMLDL AVDYIKDLQR QYKVCY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0157121e-103BT015712.1 Arabidopsis thaliana At2g42280 gene, complete cds.
GenBankBT0153391e-103BT015339.1 Arabidopsis thaliana At2g42280 gene, complete cds.
GenBankAK2289811e-103AK228981.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL16-28-L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881830.11e-154basic helix-loop-helix family protein
SwissprotQ66GR31e-154BH130_ARATH; Transcription factor bHLH130
TrEMBLD7LI371e-154D7LI37_ARALL; Basic helix-loop-helix family protein
STRINGscaffold_403077.11e-154(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-103bHLH family protein