PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00442.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 227aa    MW: 25741.4 Da    PI: 4.6598
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00442.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1880129355
                      AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr ++ +g+++AeIrd    + k  r++lg+f+taeeAa a+++a+ +l+g
  Rsa1.0_00442.1_g00008.1  80 YRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFALKG 129
                              9*******.**********32..2.24***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-3079137IPR001471AP2/ERF domain
PfamPF008472.3E-1379129IPR001471AP2/ERF domain
PROSITE profilePS5103222.98579137IPR001471AP2/ERF domain
SMARTSM003801.1E-3779143IPR001471AP2/ERF domain
PRINTSPR003673.5E-118091IPR001471AP2/ERF domain
CDDcd000182.92E-3080139No hitNo description
SuperFamilySSF541711.11E-2280139IPR016177DNA-binding domain
PRINTSPR003673.5E-11103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009753Biological Processresponse to jasmonic acid
GO:0009861Biological Processjasmonic acid and ethylene-dependent systemic resistance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEYQTSFFYE NQSQEFSPEN SCSTNSWSSQ ESFLWEESFL HDQSFLSFSP SYDDFFTFEL  60
SLIKEEVEDT VVAEEEERSY RGVRKRPWGK YAAEIRDSTR KGIRVWLGTF DTAEEAALAY  120
DQAAFALKGD LAVLNFPVNV VKESLQKMEN VNLNGGESPV IALKRKHSMR NRPRGKKKSS  180
PSSSSSSSSS SRSSIQSLAT KQESTTTLVV FEDLGAEYLE ELMRSCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-28761371172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Acts as an essential integrator of the JA and ethylene signal transduction pathways. Activates the expression of the PDF1.2A gene. {ECO:0000269|PubMed:18467450}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00023PBMTransfer from AT1G06160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00442.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9216491e-115EU921649.1 Brassica oleracea var. gemmifera ethylene-responsive factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489119.11e-163PREDICTED: ethylene-responsive transcription factor ERF094-like
SwissprotQ9LND16e-83ERF94_ARATH; Ethylene-responsive transcription factor ERF094
TrEMBLA0A397Y8221e-131A0A397Y822_BRACM; Uncharacterized protein
TrEMBLM4EUF11e-131M4EUF1_BRARP; Uncharacterized protein
STRINGBra032433.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.12e-76octadecanoid-responsive Arabidopsis AP2/ERF 59
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]
  3. Wang F, et al.
    TaNAC1 acts as a negative regulator of stripe rust resistance in wheat, enhances susceptibility to Pseudomonas syringae, and promotes lateral root development in transgenic Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 108
    [PMID:25774162]
  4. Lehmeyer M, et al.
    Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter.
    Plant Biotechnol. J., 2016. 14(1): p. 61-71
    [PMID:25819608]
  5. Caarls L,Pieterse CM,Van Wees SC
    How salicylic acid takes transcriptional control over jasmonic acid signaling.
    Front Plant Sci, 2015. 6: p. 170
    [PMID:25859250]
  6. Wang C, et al.
    The Arabidopsis Mediator Complex Subunit16 Is a Key Component of Basal Resistance against the Necrotrophic Fungal Pathogen Sclerotinia sclerotiorum.
    Plant Physiol., 2015. 169(1): p. 856-72
    [PMID:26143252]
  7. Wang C, et al.
    Arabidopsis Elongator subunit 2 positively contributes to resistance to the necrotrophic fungal pathogens Botrytis cinerea and Alternaria brassicicola.
    Plant J., 2015. 83(6): p. 1019-33
    [PMID:26216741]
  8. Schmiesing A,Emonet A,Gouhier-Darimont C,Reymond P
    Arabidopsis MYC Transcription Factors Are the Target of Hormonal Salicylic Acid/Jasmonic Acid Cross Talk in Response to Pieris brassicae Egg Extract.
    Plant Physiol., 2016. 170(4): p. 2432-43
    [PMID:26884488]
  9. Caarls L, et al.
    Assessing the Role of ETHYLENE RESPONSE FACTOR Transcriptional Repressors in Salicylic Acid-Mediated Suppression of Jasmonic Acid-Responsive Genes.
    Plant Cell Physiol., 2017. 58(2): p. 266-278
    [PMID:27837094]
  10. He X,Jiang J,Wang CQ,Dehesh K
    ORA59 and EIN3 interaction couples jasmonate-ethylene synergistic action to antagonistic salicylic acid regulation of PDF expression.
    J Integr Plant Biol, 2017. 59(4): p. 275-287
    [PMID:28168848]
  11. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  12. Li X,Yang R,Chen H
    The Arabidopsis thaliana Mediator subunit MED8 regulates plant immunity to Botrytis Cinerea through interacting with the basic helix-loop-helix (bHLH) transcription factor FAMA.
    PLoS ONE, 2018. 13(3): p. e0193458
    [PMID:29513733]