PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00419.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 185aa    MW: 20619.9 Da    PI: 8.6324
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00419.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12749754
                             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                             ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  Av+Y+k+L
  Rsa1.0_00419.1_g00002.1  7 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAVDYLKEL 49
                             89*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.993149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-16569IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10649IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-14655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-12754No hitNo description
Gene3DG3DSA:4.10.280.104.5E-16763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.17E-8114174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAVDYLKELL QRISDLHTEL  60
ESTPSSSSGL TLPSPQTLPY RVKEELCPSS SLPSPKGQQA RIEVNLREGK AVNIHMFCGR  120
RPGLLLSTMR ALDDLGLDVQ QAVISCFNGF ALDVFRAEQC QEGHEVLPEQ IKAVLLDTAG  180
YTGLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1815ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3696701e-179EU369670.1 Arabidopsis thaliana bHLH protein (SCREAM2) mRNA, complete cds.
GenBankBT0053771e-179BT005377.1 Arabidopsis thaliana At1g12860 mRNA, complete cds.
GenBankAK1180111e-179AK118011.1 Arabidopsis thaliana At1g12860 mRNA for putative bHLH transcription factor (bHLH033), complete cds, clone: RAFL19-21-N13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417183.11e-120hypothetical protein EUTSA_v10007566mg
SwissprotQ9LPW31e-119SCRM2_ARATH; Transcription factor SCREAM2
TrEMBLA0A078G2581e-122A0A078G258_BRANA; BnaC05g09250D protein
TrEMBLV4MUC21e-120V4MUC2_EUTSA; Uncharacterized protein
STRINGAT1G12860.11e-117(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.11e-100bHLH family protein