PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00387.1_g00022.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 92aa    MW: 10720.1 Da    PI: 9.332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00387.1_g00022.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.7e-0722591854
                             HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                             +  ++Lr+ lP+ + + +s K+s + +L+++++YI++L
  Rsa1.0_00387.1_g00022.1 22 DLVSKLRQFLPEiRERRRSDKVSASKVLQETCNYIRKL 59
                             66689*******999*********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.699459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-61973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-42259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-72277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSNRRSRQSS SSTRISDDQM IDLVSKLRQF LPEIRERRRS DKVSASKVLQ ETCNYIRKLH  60
REVDNLSDRL SLLLDSVDED SQEAAVIRNL LT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0246402e-90BT024640.1 Arabidopsis thaliana unknown protein (At3g28857) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_974372.11e-51protein PACLOBUTRAZOL RESISTANCE 5
SwissprotQ9LJX12e-53PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A087GV576e-50A0A087GV57_ARAAL; Uncharacterized protein
STRINGAT3G28857.14e-51(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-31bHLH family protein