PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00385.1_g00023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 716aa    MW: 78115.4 Da    PI: 6.8012
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00385.1_g00023.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.000625535901355
                              HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              R+ i +++ eLrel+P+ +      K s  + Le++++++  Lq
  Rsa1.0_00385.1_g00023.1 553 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 590
                              67799************55......5566667777777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.5E-3135191IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000839.93E-4535591No hitNo description
PROSITE profilePS5088811.28540589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-4553601IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-5553596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MGNRQISQDE VGPPINPRAG LRREQAGRGS YRGKILRSLC SNTDWKYAVF WKLNQRSRMV  60
LTMGDAYYDN NHGHSNSPEV QGCSVIPKDM HAGAHDSLGL AVAKMAYHVY SLGEGIVGQV  120
AVSGEHQWVF PEYNGNCHSA SEFHNVWESQ IYAGVKTILV VAVGPCGVVQ LGSLLKVDED  180
VTLVNHIRHM FLAMADHAAG LMQCNMNNSL CLPNIPSEGL HVESYPNCSG EVGKAIDVKE  240
LTQYKLIRSD SMPYNTPPSC LLAEKAAQVV QGSSCGSYSS VTFGFPIDLV DATRHENQVG  300
TNIVSGAPHV GMTSGCKDPN LHEHVMKNHV LNNNTSSSAL ATEAERLISG QSYTCLDSSS  360
YQNEVFRLEG KCESSRRLDA LISSGYPFAG SELLEALGSG FKQTSRGGHE ELVKSEHAST  420
TGPTCDTSHS QLTFDPGPEN LLDAVVANVC HSDGNARDEI LSSRSVHSLL TSMAEPSGQK  480
VHSVAMMKQL PLAEVVDTQQ TPSDICGAFS SIGFSSTCPS SSSDQFQTSL EMPKKIKKRA  540
KPGESSRPRP RDRQLIQDRI KELRELVPNG SKCSIDSLLE RTIKHMLFLQ NVTKHADKLS  600
KSASAKMQQK ESGTQGSSCA VEVGGHLQVC SIIVENLNKQ GMVLIEMLCE ECSHFLEIAN  660
VIRSLDLIIL RGVTEAQGEK TWICFVVESQ NNKVMQRMDI LWSLVQIFQP KANGKH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529850.0AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636652.10.0PREDICTED: transcription factor bHLH155-like
SwissprotQ58G010.0LHWL3_ARATH; Transcription factor bHLH155
TrEMBLA0A0D3C3E30.0A0A0D3C3E3_BRAOL; Uncharacterized protein
STRINGBra021715.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20832030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.10.0conserved peptide upstream open reading frame 7