PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00382.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 276aa    MW: 31266.7 Da    PI: 7.7089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00382.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12106152354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h e+Er RR+++N++f  Lr ++P+       K++K + Le +v YIk+L
  Rsa1.0_00382.1_g00003.1 106 MNHVEAERLRREKLNQRFYALRAVVPNV-----SKMDKGSLLEDTVTYIKEL 152
                              5899***********************6.....5****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.882103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16105172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-12106153No hitNo description
Gene3DG3DSA:4.10.280.109.1E-16107173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10107152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNLLNSDDAL FMNDAFLNAS DLWPVTPADI SQRPLAPEVI NFSSDSWPLV PPAYFGQIQY  60
EESNILASSV KLEDSFHFHI YAKTTPENKP PKKRGRRPTH GKEGPMNHVE AERLRREKLN  120
QRFYALRAVV PNVSKMDKGS LLEDTVTYIK ELKLNAENAE SEKKAIEIQL NELSEKIAGR  180
RKRSSSVCSG GEKESEIEVK IDVKVIDREA IIRLESSKNN HPGARLMSAF MDLEVEVSYA  240
SISVMNDLMI QQATVKMGSR IYKQEQLRNF LLSKIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101672.11e-157PREDICTED: transcription factor bHLH28-like
SwissprotQ392049e-75MYC2_ARATH; Transcription factor MYC2
SwissprotQ9LUK71e-75BH028_ARATH; Transcription factor bHLH28
TrEMBLM4E8861e-157M4E886_BRARP; Uncharacterized protein
STRINGBra024992.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2031456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.16e-77NACL-inducible gene 1