PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00361.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 319aa    MW: 35790.8 Da    PI: 6.9641
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00361.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.62.7e-31481542128
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 
                               g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i  l   +++                   
  Rsa1.0_00361.1_g00006.1  48 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSISGLDPIDTNFD----------------- 116
                              689**********************************************************99933333................. PP

                      TCP  88 gkaaksaakskksqksaasalnlak.esrakararare.rtre 128
                                   ++ + +ks++s++s l+l++ esr k+r+r  + r+++
  Rsa1.0_00361.1_g00006.1 117 -----QTLSLSKSSTSESSLLSLSRtESRGKERERTSKeRDNK 154
                              .....12233344444444445544455555555432223333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-2849154IPR005333Transcription factor, TCP
PROSITE profilePS5136930.32350108IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEDDDDIETQ QHQQQQTSRK LQRLSSDKTE MRDWSDPSSR IIRVSRASGG KDRHSKVLTS  60
KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA ASDSISGLDP IDTNFDQTLS  120
LSKSSTSESS LLSLSRTESR GKERERTSKE RDNKDLQSSF TQLLTSGFDE PNRNWTGGGS  180
SDCFNPVQLM PNSNSLNHRQ EPSLNHHHSQ NQYSFVPNYN FGISSSDSPG ATGCYSSRGT  240
LQSNSQSLFL NNNNNNINQR SISSSSSSSS PMDSQSISFF MAPPLNHHSP QLPEAFDGRL  300
YLYYGEGNRS SDDKGKERR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1955108154Putative transcription factor PCF6
5zkt_B3e-1955108154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00361.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451672.10.0PREDICTED: transcription factor TCP24-like
SwissprotQ9C7581e-134TCP24_ARATH; Transcription factor TCP24
TrEMBLA0A3P6AVR61e-177A0A3P6AVR6_BRAOL; Uncharacterized protein
STRINGBo3g147760.11e-176(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-109TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]