PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00360.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 247aa    MW: 28070.3 Da    PI: 9.1424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00360.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08142189455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  Rsa1.0_00360.1_g00004.1 142 SHSLAERVRRGKINERLRCLQDIVPGC----YKSMGMATMLDEIINYVQSLQ 189
                              8*************************8....366999**************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.42E-9136193No hitNo description
SuperFamilySSF474591.83E-16136206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.408138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-16138199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-6142189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-9144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAMDIYSSMT QAADLNNNSS NLQFQTFPPF STCLDSFFLH RHQQQSLAYP GKYPGSDNNL  60
STTSILYHPN HNNVHETKKR KDSLQTLSSS ENSSVSDQLN INTTETGCSR RGKRSKKQKN  120
QKEEKEREVV HVRARRGQAT DSHSLAERVR RGKINERLRC LQDIVPGCYK SMGMATMLDE  180
IINYVQSLQN QVELLSMKLT AASSFYDFNS ETDAVDSMQR ARAREAVEMG RQTRDGNPVL  240
HLSTWSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149281.11e-143PREDICTED: transcription factor BEE 1
SwissprotQ8GZ131e-116BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A078GI841e-142A0A078GI84_BRANA; BnaA06g12520D protein
STRINGBra025910.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-99BR enhanced expression 1