PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00336.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 257aa    MW: 29015.1 Da    PI: 4.7506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00336.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-071291701055
                              HHHHHH.HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdr.iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +rRRd+ + +++++L++llP++      K + +++L  A+eY+k+Lq
  Rsa1.0_00336.1_g00001.1 129 KRRRDDmMSNKMHTLQRLLPNC-----HKEDTVSVLDTAIEYMKDLQ 170
                              5566552789***********9.....699****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.23120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-5125175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.64E-8129174No hitNo description
PfamPF000105.0E-5129170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-9130178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-11130194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MELGWNNDVG SLAVKDKGMS ERENSDEERL ITGLKSSYGY VDHDQANIQF QIVPEIHKEE  60
ENSEKDLKLA VPDEHSETGH HHDHQINGFS DSSDNHDKLK RSRLENFSDD ESEGFTREVP  120
TVTIKGFKKR RRDDMMSNKM HTLQRLLPNC HKEDTVSVLD TAIEYMKDLQ FQLQSLRALR  180
LAITTRLIVL FSMISIGPID GSDVYNEEES LFCSGDIKLR NAQRPGDGDG YDSGYKSGES  240
NNVATINPDA QLAVATL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584111.13e-96PREDICTED: LOW QUALITY PROTEIN: transcription factor HFR1
SwissprotQ9FE223e-71HFR1_ARATH; Transcription factor HFR1
TrEMBLM4EWY01e-102M4EWY0_BRARP; Uncharacterized protein
STRINGBra033315.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140151624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02340.14e-72bHLH family protein