PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00327.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 270aa    MW: 30916.9 Da    PI: 8.5965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00327.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09137183555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h+ +Er RR++i ++++ L++++P +    +k   Ka +L + ++Y++sLq
  Rsa1.0_00327.1_g00010.1 137 HSLAERARREKISKKMQCLQDIVPGC----NKVTGKAGMLDEIINYVQSLQ 183
                              999**********************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.96E-7130187No hitNo description
SuperFamilySSF474598.9E-17130202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.507132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17134201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-7137183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDLTGLKWLQ QQQRMVSPEF LQILASDGRE ELRRVESYLG NNIYDTIDGC ISRTSSFQME  60
PVKNNEENRA VALLNKRKSE GKTETREKKK KKIKAEDETE SSIKGKSNMS NTETSSDIQK  120
QDYIHVRARR GEATDRHSLA ERARREKISK KMQCLQDIVP GCNKVTGKAG MLDEIINYVQ  180
SLQQQVEFLS MKLSVLNPQL EFHINELSMM ADLRSFPLHQ QGSLDYSVMN SNQTTSLVAK  240
NDTSSSWDIH SQCPYNNLRT DPVSNFFSLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17591KRKSEGKTETREKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527230.0AK352723.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-A24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138432.11e-165PREDICTED: transcription factor BEE 2-like
SwissprotQ93VJ41e-157BEE2_ARATH; Transcription factor BEE 2
TrEMBLA0A078I0S81e-163A0A078I0S8_BRANA; BnaA03g53460D protein
STRINGAT4G36540.11e-155(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.21e-140BR enhanced expression 2