PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00313.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 260aa    MW: 29285.9 Da    PI: 5.1761
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00313.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.65.9e-19143199259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              dD ++WrKYGqKe+ g +fpr    Ct++   +Cp+kk+v+r +edp ++ +tY+++H+++
  Rsa1.0_00313.1_g00007.1 143 DDNHTWRKYGQKEILGFKFPR----CTHEklyKCPAKKQVQRLDEDPYTFCVTYRSSHTCH 199
                              8*******************6....**999999*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-19137199IPR003657WRKY domain
SuperFamilySSF1182907.45E-18140200IPR003657WRKY domain
SMARTSM007748.2E-25142200IPR003657WRKY domain
PROSITE profilePS5081113.712143196IPR003657WRKY domain
PfamPF031068.8E-17143199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEEIMSMIFN GINLVKELEF SLSAQESPES LSTSLGSVST LFGDANERLK ILLARRNSLV  60
LNQPEPKPVS MSDLDQIMMQ QIEHGLMQDY SLREGVMQGV KNIDSGPGCS FSTPRPRRRQ  120
KDVEEEKVFV AAARMGNMDT PPDDNHTWRK YGQKEILGFK FPRCTHEKLY KCPAKKQVQR  180
LDEDPYTFCV TYRSSHTCHF FTTSPISSTA ATATTDGHYG STVVNMAEAL FGNVDSVVPF  240
DESYFDYRSL FNGSGSDWDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-14143198968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00313.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459228.10.0PREDICTED: WRKY transcription factor 55-like isoform X1
SwissprotQ9SHB57e-76WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A078J5N81e-171A0A078J5N8_BRANA; BnaC04g55610D protein
TrEMBLA0A0D3BXJ11e-171A0A0D3BXJ1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C9D91e-171A0A3P6C9D9_BRAOL; Uncharacterized protein
STRINGBo4g114050.11e-172(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-66WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]