PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00308.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 221aa    MW: 25567.4 Da    PI: 7.3232
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00308.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.31.3e-3237142199
                              EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                              f+k ltpsdv+k++rlv+pk++ae++        + + e++  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD
  Rsa1.0_00308.1_g00009.1  37 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaavvDAV-EKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGD 121
                              99*****************************997555.5778******************************************** PP

                              EEEEEE-SSSEE..EEEEE-S CS
                       B3  79 fvvFkldgrsefelvvkvfrk 99 
                              +v+F++++ ++++++++++r+
  Rsa1.0_00308.1_g00009.1 122 VVIFHRHRADGGRFFIGWRRR 142
                              *****88779999******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-4131150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.01E-3034142IPR015300DNA-binding pseudobarrel domain
CDDcd100176.19E-2836132No hitNo description
SMARTSM010198.4E-2437143IPR003340B3 DNA binding domain
PfamPF023621.3E-2937142IPR003340B3 DNA binding domain
PROSITE profilePS5086314.09937143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSINQYSSEF HYHSLMWQQQ QQRHHQNEVV EEKEALFEKP LTPSDVGKLN RLVIPKQHAE  60
RYFPLAAAVV DAVEKGLLLC FEDEEGKPWR FRYSYWNSSQ SYVLTKGWSR YVKEKQLDAG  120
DVVIFHRHRA DGGRFFIGWR RRGDSSSSSD SYRHLQSNAY PHAVNRIAGA QAVENQRGNS  180
KTLRLFGVNM ECQIDSDCSE PSTPDGFTTC PTNHDQFSYL T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-483414511120DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175870.0AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141558.11e-136PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8GYJ21e-125Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A078I1R31e-136A0A078I1R3_BRANA; BnaAnng07660D protein
TrEMBLM4DL811e-136M4DL81_BRARP; Uncharacterized protein
STRINGBra017262.1-P1e-136(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-112B3 family protein