PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00301.1_g00039.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 93aa    MW: 10517.7 Da    PI: 9.3621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00301.1_g00039.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.5e-0718591454
                             HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                             d+i + +++Lr+ +P+ + + +s  +s + +L+++++YI++L
  Rsa1.0_00301.1_g00039.1 18 DQITDLISKLRQSIPEiRQNRRSNTVSASKVLQETCNYIRNL 59
                             799*************9977777779999***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.252459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-81862IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-51859IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-81884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRQAS SSSRISDDQI TDLISKLRQS IPEIRQNRRS NTVSASKVLQ ETCNYIRNLN  60
KEADDLSDRL SQLLETIDPN SPQAAIIRSL ISE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0054601e-95BT005460.1 Arabidopsis thaliana clone U51275 putative bHLH protein (At5g15160) mRNA, complete cds.
GenBankAK1188871e-95AK118887.1 Arabidopsis thaliana At5g15160 mRNA for unknown protein, complete cds, clone: RAFL21-22-D11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400033.14e-47hypothetical protein EUTSA_v10015131mg
RefseqXP_013740192.15e-47PREDICTED: transcription factor PRE2
RefseqXP_013740167.15e-47PREDICTED: transcription factor PRE2-like
RefseqXP_013627243.15e-47PREDICTED: transcription factor PRE2
RefseqXP_009131445.15e-47PREDICTED: transcription factor PRE2-like
SwissprotQ9LXG54e-47PRE2_ARATH; Transcription factor PRE2
TrEMBLA0A078C1H86e-47A0A078C1H8_BRANA; BnaA03g05270D protein
TrEMBLA0A087G7A14e-47A0A087G7A1_ARAAL; Uncharacterized protein
TrEMBLA0A0D3B1806e-47A0A0D3B180_BRAOL; Uncharacterized protein
TrEMBLM4CPZ76e-47M4CPZ7_BRARP; Uncharacterized protein
TrEMBLV4N7A04e-47V4N7A0_EUTSA; Uncharacterized protein
STRINGBra006286.1-P2e-46(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15160.16e-48BANQUO 2