PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00270.1_g00019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 319aa    MW: 36995 Da    PI: 8.035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00270.1_g00019.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12158206152
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                              +r +h ++Er+RR+++N+ ++ Lr llP++   + ++ + a+i+  A++Y k
  Rsa1.0_00270.1_g00019.1 158 QRINHIAAERNRRRQMNEHINSLRLLLPPS---YIQRGDQASIVGGAINYAK 206
                              699***************************...9****************66 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-14156226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-8156210No hitNo description
PROSITE profilePS5088814.907157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-11157210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7163214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MERFQGQINP CFLDRKTDAR SLEVQGFAEA QSFAFKEEEE EESMQDTVPF LQILQSEEPS  60
FLRLLSLQNL KETWEIERFL SHEGYPHFYQ NQVSASSIEG TKQALSSQEA DVILLRSSSS  120
PTQHKRKNRD LLAPYMTREK RKRRKTKPSQ NIEEIENQRI NHIAAERNRR RQMNEHINSL  180
RLLLPPSYIQ RGDQASIVGG AINYAKVLEQ IILSLELQKR TQHSRVENRV HEDETCAPRI  240
EATLIQNHVN LRVVCRKKQG QLIKGIISLE KLRLTVLHLN IATTSHLLVS YRFNLEMENG  300
CELESANDIT KAAHQIFDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124144KRKNRDLLAPYMTREKRKRRK
2139144KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00270.1_g00019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480977.10.0PREDICTED: transcription factor bHLH67-like
SwissprotQ700E41e-131BH067_ARATH; Transcription factor bHLH67
TrEMBLA0A078J1M21e-176A0A078J1M2_BRANA; BnaCnng29550D protein
STRINGXP_006292401.11e-137(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-129bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]