PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00269.1_g00028.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 261aa    MW: 29111.6 Da    PI: 7.6618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00269.1_g00028.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.3e-084590554
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             +  rE+ RRd++N+ f eL   l ++     +K +Ka+iL  +++ +k+L
  Rsa1.0_00269.1_g00028.1 45 KADREKIRRDKLNEQFLELGNALDPN----RPKSDKASILIDTIQTLKDL 90
                             5679*******************997....79************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.01E-53794No hitNo description
PROSITE profilePS5088811.8964090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-1343110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-64590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-64696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1248112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEQTKKLKTS SEFSLSDESS ASSSIRPEKI LEVKKESVSC RNIHKADREK IRRDKLNEQF  60
LELGNALDPN RPKSDKASIL IDTIQTLKDL MTQVDRLKAE HVTLSQESRE LVQEKRELRE  120
EKTSLKSDIE ILNAQYQHRV RSMVPWIPHY SYPVPLVAIT QGPVSTLPFP LHGTQNPAPS  180
PNSCSTFMPY SASLSSKTEQ KDDVGLELEL NTHASSSAQQ DVSGKEKGKL TTTASSSNSY  240
YSSSQAVQDS SLGNVNNIFK S
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00269.1_g00028.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478868.11e-158PREDICTED: transcription factor bHLH11
SwissprotQ8W2F26e-92BH011_ARATH; Transcription factor bHLH11
TrEMBLA0A0D3DHX81e-129A0A0D3DHX8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F6D01e-129A0A3P6F6D0_BRAOL; Uncharacterized protein
STRINGBo7g117760.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36060.21e-93bHLH family protein
Publications ? help Back to Top
  1. Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D
    Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates.
    Genet. Res., 2006. 88(1): p. 45-56
    [PMID:17014743]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  5. Tanabe N, et al.
    The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana.
    J. Plant Res., 2019. 132(1): p. 93-105
    [PMID:30417276]